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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002349
species: Raphanus raphanistrum
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTACATCAACTGAAT

miRNA*
 TCGCTTGATGCAGGTCGGAA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TTCGAATCTTGTCTCTGTTTGATCGGGCTCGGATTCGCTTGATGCAGGTCGGAACTGATTGGCTGACACAATCACATAGGTGCTTTTGCCTTATTGGTTTG
TAAGTAGGGATTGGCTCCCGCCTTACATCAACTGAATCGGAGCCTTCAATGGTGAAACGAGTCCAAT

dot-bracket secondary structure
)......(((((.((...((((..((((((.((((((.((((((.((((.(((.((((((.(((.(((.(((((...((((......))))...)))))))
).)))...)))))).))).))))..)))))).)))))).))))))))))....)).)))))......


SIMILARITIES
miRBase ath-MIR168a: 1.0E-13

PMRD ath-miRf10239-akr: 1.0E-13

microPC miR168: 1.0E-10		UniProt no hits

RFAM 8MIR168: 3.0E-15		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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