miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002349
species: Raphanus raphanistrum
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCGCCTTACATCAACTGAAT

miRNA*
TCGCTTGATGCAGGTCGGAA

mismatches: 3
bulges: 1

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pre-miRNA
TCGAATCTTGTCTCTGTTTGATCGGGCTCGGATTCGCTTGATGCAGGTCGGAACTGATTGGCTGACACAATCACATAGGTGCTTTTGCCTTATTGGTTTG
TAAGTAGGGATTGGCTCCCGCCTTACATCAACTGAATCGGAGCCTTCAATGGTGAAACGAGTCCAAT


dot-bracket secondary structure
......(((((.((...((((..((((((.((((((.((((((.((((.(((.((((((.(((.(((.(((((...((((......))))...)))))))
).)))...)))))).))).))))..)))))).)))))).))))))))))....)).)))))......



SIMILARITIES
miRBase ath-MIR168a: 0.0000000000001

PMRD ath-miRf10239-akr: 0.0000000000001

microPC miR168: 0.0000000001
UniProt no hits

RFAM MIR168: 0.000000000000003
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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