ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTACATCAACTGAAT miRNA* TCGCTTGATGCAGGTCGGAA mismatches: 3 bulges: 1 |
pre-miRNA
TCGAATCTTGTCTCTGTTTGATCGGGCTCGGATTCGCTTGATGCAGGTCGGAACTGATTGGCTGACACAATCACATAGGTGCTTTTGCCTTATTGGTTTG
TAAGTAGGGATTGGCTCCCGCCTTACATCAACTGAATCGGAGCCTTCAATGGTGAAACGAGTCCAAT
dot-bracket secondary structure
......(((((.((...((((..((((((.((((((.((((((.((((.(((.((((((.(((.(((.(((((...((((......))))...)))))))
).)))...)))))).))).))))..)))))).)))))).))))))))))....)).)))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGAATCTTGTCTCTGTTTGATCGGGCTCGGATTCGCTTGATGCAGGTCGGAACTGATTGGCTGACACAATCACATAGGTGCTTTTGCCTTATTGGTTTG
TAAGTAGGGATTGGCTCCCGCCTTACATCAACTGAATCGGAGCCTTCAATGGTGAAACGAGTCCAAT
dot-bracket secondary structure
......(((((.((...((((..((((((.((((((.((((((.((((.(((.((((((.(((.(((.(((((...((((......))))...)))))))
).)))...)))))).))).))))..)))))).)))))).))))))))))....)).)))))......
SIMILARITIES| miRBase ath-MIR168a: 0.0000000000001 PMRD ath-miRf10239-akr: 0.0000000000001 microPC miR168: 0.0000000001 | UniProt no hits RFAM MIR168: 0.000000000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
