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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000236
species: Brassica napus
miRNA family: MIRf52
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGCGTTTGCGGGTGGTAGCG

miRNA*
 CAAACGCCCGCAACCGCAAAC

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TTTATCCTCCCGCAAACGCCCGCAACCGCAAACGCTAGCTGGAACCAGCTTTTGAATTTATGAGGTTCAGAGCGATTTGGAGCGATTTGGAGCGGTTTAG
AGCGGTTTGAGCGATTGTTGCAAAACGCCAGCAACCGCTACCAACCGCAAAAGCTGCGTTTGCGGGTGGTAGCGGGAAAACCA

dot-bracket secondary structure
.......((((((...(((((((((.((((..(((.(((((....)))))((((((((.....))))))))))).((((((....))))))((((((...
(((((((...((...((((....))))...)))))))))...))))))......)))).)))))))))...))))))......


SIMILARITIES
miRBase no hits

PMRD ath-miRf11089-akr: 0.00000000000004

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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