ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIRf482
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAAGAGGCAGTGCATGGGAA miRNA* TCCATGCTCTGCTTGTTCCCT mismatches: 4 bulges: 0 |
pre-miRNA
GGAGGAGAAACAGGGAGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAAACTCGATCCATGCTCTGCTTGTT
CCCTGTCTCTCTCTCGTTACCA
dot-bracket secondary structure
((.((.((...((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..)))))).....)))..))))))).)))))).))
))))).)))))).)).)).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAGGAGAAACAGGGAGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAAACTCGATCCATGCTCTGCTTGTT
CCCTGTCTCTCTCTCGTTACCA
dot-bracket secondary structure
((.((.((...((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..)))))).....)))..))))))).)))))).))
))))).)))))).)).)).)).
SIMILARITIES| miRBase ath-MIR408: 3e-32 PMRD ath-miR408: 3e-32 microPC miR408: 0.00000002 | UniProt no hits RFAM MIR408: 1e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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