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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000237
species: Brassica napus
miRNA family: MIRf482
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAAGAGGCAGTGCATGGGAA

miRNA*
TCCATGCTCTGCTTGTTCCCT

mismatches: 4
bulges: 0

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pre-miRNA
GGAGGAGAAACAGGGAGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAAACTCGATCCATGCTCTGCTTGTT
CCCT
GTCTCTCTCTCGTTACCA


dot-bracket secondary structure
((.((.((...((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..)))))).....)))..))))))).)))))).))
))))
).)))))).)).)).)).



SIMILARITIES
miRBase ath-MIR408: 3e-32

PMRD ath-miR408: 3e-32

microPC miR408: 0.00000002
UniProt no hits

RFAM MIR408: 1e-28
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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