ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf449
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTTTGCTTCCCCAATGCTG miRNA* GCTCAGGAGGCGGAGGAAC mismatches: 3 bulges: 2 |
pre-miRNA
AGGGGCTGTAAAGGAGCACTCTTTCCATCTTTTCTTTGCTTCCCCAATGCTGTCTTAAAATCGTCTTCCTCGAGCTCGCTGCCGGAATCGATGGGCTCGA
ACTCCTTGGCGATAGGATCATCGGTGGGCGGCTCAGGAGGCGGAGGAACGTTGAGGGAGTCCTCCTGGATCATGTGC
dot-bracket secondary structure
....((.((..(((((.((((((((.((..(((((((((((((.....(((((((....((((...((((.....((((((..(((.((((.....))))
..))).)))))).))))....)))))))))))...))))))))))))).)).)))))))).)))))..))...))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGGGCTGTAAAGGAGCACTCTTTCCATCTTTTCTTTGCTTCCCCAATGCTGTCTTAAAATCGTCTTCCTCGAGCTCGCTGCCGGAATCGATGGGCTCGA
ACTCCTTGGCGATAGGATCATCGGTGGGCGGCTCAGGAGGCGGAGGAACGTTGAGGGAGTCCTCCTGGATCATGTGC
dot-bracket secondary structure
....((.((..(((((.((((((((.((..(((((((((((((.....(((((((....((((...((((.....((((((..(((.((((.....))))
..))).)))))).))))....)))))))))))...))))))))))))).)).)))))))).)))))..))...))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10984-akr: 0.000000002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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