miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002370
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf449
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCTTTGCTTCCCCAATGCTG

miRNA*
GCTCAGGAGGCGGAGGAAC

mismatches: 3
bulges: 2

View larger
pre-miRNA
AGGGGCTGTAAAGGAGCACTCTTTCCATCTTTTCTTTGCTTCCCCAATGCTGTCTTAAAATCGTCTTCCTCGAGCTCGCTGCCGGAATCGATGGGCTCGA
ACTCCTTGGCGATAGGATCATCGGTGGGCGGCTCAGGAGGCGGAGGAACGTTGAGGGAGTCCTCCTGGATCATGTGC


dot-bracket secondary structure
....((.((..(((((.((((((((.((..(((((((((((((.....(((((((....((((...((((.....((((((..(((.((((.....))))
..))).)))))).))))....)))))))))))...))))))))))))).)).)))))))).)))))..))...))..



SIMILARITIES
miRBase no hits

PMRD ath-miRf10984-akr: 0.000000002

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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