ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIRf1147
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTGAACCGGTCCGGTTTAG miRNA* ATACTGTTCGTTCTATATT mismatches: 4 bulges: 2 |
pre-miRNA
AAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAG
ATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACG
CCCC
dot-bracket secondary structure
.........((.((((((.((((.((((.((((((..(((((((..((...............(((((....(((((................)))))..
.(((((.((.....................)).))))).)))))...........))..)))))))..))).)))..)))).)))))))))).)).....
....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAG
ATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACG
CCCC
dot-bracket secondary structure
.........((.((((((.((((.((((.((((((..(((((((..((...............(((((....(((((................)))))..
.(((((.((.....................)).))))).)))))...........))..)))))))..))).)))..)))).)))))))))).)).....
....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SS39|KCS14_ARATH: 4e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
