ABOUT THIS RECORDspecies: Saccharum hybrid cultivar CoS 767
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTTCCAAATT miRNA* TTTGGAATGGATGGAGTATAT mismatches: 2 bulges: 0 |
pre-miRNA
TGAACACCCCCATACTATGTTCTACTCCCTCCGTTCCAAATTATTAGTCGTTCTGGCTTTTCTAGGTATATTGTTTTTTGCTATGTATCTAGAAAAGCCA
AAAAGACTTATAATTTGGAATGGATGGAGTATATATATTACTGCTATGTTCA
dot-bracket secondary structure
((((((......((.(((((..((((((.(((((((((((((((.((((.((.((((((((((((((((((.((.....)).))))))))))))))))))
.)).)))).))))))))))))))).)))))).))))).))......))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAACACCCCCATACTATGTTCTACTCCCTCCGTTCCAAATTATTAGTCGTTCTGGCTTTTCTAGGTATATTGTTTTTTGCTATGTATCTAGAAAAGCCA
AAAAGACTTATAATTTGGAATGGATGGAGTATATATATTACTGCTATGTTCA
dot-bracket secondary structure
((((((......((.(((((..((((((.(((((((((((((((.((((.((.((((((((((((((((((.((.....)).))))))))))))))))))
.)).)))).))))))))))))))).)))))).))))).))......))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC miR1439: 0.00003 | UniProt no hits RFAM MIR1122: 6e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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