miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002442
species: Saccharum hybrid cultivar CoS 767
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTACTCCCTCCGTTCCAAATT

miRNA*
 TTTGGAATGGATGGAGTATAT

mismatches: 2
bulges: 0
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pre-miRNA
 TGAACACCCCCATACTATGTTCTACTCCCTCCGTTCCAAATTATTAGTCGTTCTGGCTTTTCTAGGTATATTGTTTTTTGCTATGTATCTAGAAAAGCCA
AAAAGACTTATAATTTGGAATGGATGGAGTATATATATTACTGCTATGTTCA

dot-bracket secondary structure
((((((......((.(((((..((((((.(((((((((((((((.((((.((.((((((((((((((((((.((.....)).))))))))))))))))))
.)).)))).))))))))))))))).)))))).))))).))......))))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR1439: 0.00003		UniProt no hits

RFAM MIR1122: 6e-16		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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