ABOUT THIS RECORDspecies: Saccharum hybrid cultivar CoS 767
miRNA family: miR396f
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCAAGAAAGCTGTGGGAAG miRNA* TTCCACAGCTTTCTTGAACTT mismatches: 1 bulges: 0 |
pre-miRNA
TCTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTTCTCCTCCCCCTTATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCATCTCCG
AAGAAGGTCAAGAAAGCTGTGGGAAGAAATGACATAACAAGGACT
dot-bracket secondary structure
......((((((((.(((..(((((((((((((((((((.(((((((....................................................)
)))))).)))))))))))))))))))..))).))).....)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTTCTCCTCCCCCTTATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCATCTCCG
AAGAAGGTCAAGAAAGCTGTGGGAAGAAATGACATAACAAGGACT
dot-bracket secondary structure
......((((((((.(((..(((((((((((((((((((.(((((((....................................................)
)))))).)))))))))))))))))))..))).))).....)))))
SIMILARITIES| miRBase sbi-MIR396c: 3e-20 PMRD sbi-miR396c: 3e-20 microPC miR396: 0.0000001 | UniProt no hits RFAM MIR396: 0.0000000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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