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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002446
species: Saccharum hybrid cultivar CoS 767
miRNA family: miR396f
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGTCAAGAAAGCTGTGGGAAG

miRNA*
TTCCACAGCTTTCTTGAACTT

mismatches: 1
bulges: 0

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pre-miRNA
TCTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTTCTCCTCCCCCTTATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCATCTCCG
AAGAAGGTCAAGAAAGCTGTGGGAAGAAATGACATAACAAGGACT


dot-bracket secondary structure
......((((((((.(((..(((((((((((((((((((.(((((((....................................................)
)))))).)))))))))))))))))))..))).))).....)))))



SIMILARITIES
miRBase sbi-MIR396c: 3e-20

PMRD sbi-miR396c: 3e-20

microPC miR396: 0.0000001
UniProt no hits

RFAM MIR396: 0.0000000000006
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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