ABOUT THIS RECORDspecies: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAATGGAGTGAGTAGA miRNA* TACTTCTCCATTCCAAATTG mismatches: 2 bulges: 1 |
pre-miRNA
TCCATTCCAAATTGGTAAGAAATACTTCTCCATTCCAAATTGTAAGTCATTTTGGCTTTTCTACATACATAGCTTTTGTTACATATCTAGATATACATTA
TGTCCGGATATAAAGTAAACACTATGTATCTAAAAAAGCTAGAACAACTTACAATTTGGAATGGAGTGAGTAGAATTTTAATCGAGTTTACTA
dot-bracket secondary structure
...........(((((.((((.(((((((((((((((((((((((((..(((((((((((.((.((((((((......((((((((((.((((((...))
)))).))))))...))))...)))))))).)).)))))))))))..)))))))))))))))))))).)))))...)))).)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCATTCCAAATTGGTAAGAAATACTTCTCCATTCCAAATTGTAAGTCATTTTGGCTTTTCTACATACATAGCTTTTGTTACATATCTAGATATACATTA
TGTCCGGATATAAAGTAAACACTATGTATCTAAAAAAGCTAGAACAACTTACAATTTGGAATGGAGTGAGTAGAATTTTAATCGAGTTTACTA
dot-bracket secondary structure
...........(((((.((((.(((((((((((((((((((((((((..(((((((((((.((.((((((((......((((((((((.((((((...))
)))).))))))...))))...)))))))).)).)))))))))))..)))))))))))))))))))).)))))...)))).)))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC miR1439: 0.00004 | UniProt no hits RFAM MIR1122: 0.00000000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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