miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002450
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTTGGAATGGAGTGAGTAGA

miRNA*
TACTTCTCCATTCCAAATTG

mismatches: 2
bulges: 1

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pre-miRNA
TCCATTCCAAATTGGTAAGAAATACTTCTCCATTCCAAATTGTAAGTCATTTTGGCTTTTCTACATACATAGCTTTTGTTACATATCTAGATATACATTA
TGTCCGGATATAAAGTAAACACTATGTATCTAAAAAAGCTAGAACAACTTACAATTTGGAATGGAGTGAGTAGAATTTTAATCGAGTTTACTA


dot-bracket secondary structure
...........(((((.((((.(((((((((((((((((((((((((..(((((((((((.((.((((((((......((((((((((.((((((...))
)))).))))))...))))...)))))))).)).)))))))))))..)))))))))))))))))))).)))))...)))).)))))........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR1439: 0.00004
UniProt no hits

RFAM MIR1122: 0.00000000000005
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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