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Species belonging to selected taxon:
Cynodon dactylon
,
Eragrostis curvula
,
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST002450
species:
Saccharum hybrid cultivar SP70-1143
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143
Saccharum hybrid cultivar
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTTGGAATGGAGTGAGTAGA
miRNA*
TACTTCTCCATTCCAAATTG
mismatches:
2
bulges:
1
View larger
pre-miRNA
TCCATTCCAAATTGGTAAGAAA
TACTTCTCCATTCCAAATTG
TAAGTCATTTTGGCTTTTCTACATACATAGCTTTTGTTACATATCTAGATATACATTA
TGTCCGGATATAAAGTAAACACTATGTATCTAAAAAAGCTAGAACAACTTACA
ATTTGGAATGGAGTGAGTAGA
ATTTTAATCGAGTTTACTA
dot-bracket secondary structure
...........(((((.((((.
((((((((((((((((((((
(((((..(((((((((((.((.((((((((......((((((((((.((((((...))
)))).))))))...))))...)))))))).)).)))))))))))..)))))))
))))))))))))).)))))..
.)))).)))))........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
miR1439
:
0.00004
UniProt
no hits
RFAM
MIR1122: 0.00000000000005
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record