ABOUT THIS RECORDspecies: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGTCTCAAGCTT miRNA* GCTAGAGGCAGCAACTGCATA mismatches: 1 bulges: 0 |
pre-miRNA
TGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCANGTTGTGCAGTTGT
TGTCTCAAGCTTGCTGCCTCCCTTTGC
dot-bracket secondary structure
.((((((((.((((.((((((.((((((((((((((((((..((((((((((((((((....)))))........))))))))))).).)))))))))))
)))))).)))))).)))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCANGTTGTGCAGTTGT
TGTCTCAAGCTTGCTGCCTCCCTTTGC
dot-bracket secondary structure
.((((((((.((((.((((((.((((((((((((((((((..((((((((((((((((....)))))........))))))))))).).)))))))))))
)))))).)))))).)))).))))))))
SIMILARITIES| miRBase ssp-MIR444c: 7e-55 PMRD pvi-miR444: 3e-51 microPC miR444: 7e-55 | UniProt no hits RFAM MIR444: 4e-60 | most similar mature miRNAs |
Identical with: miR444 from microPC (MNEST045131) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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