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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002453
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTGTTGTCTCAAGCTT

miRNA*
 GCTAGAGGCAGCAACTGCATA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCANGTTGTGCAGTTGT
TGTCTCAAGCTTGCTGCCTCCCTTTGC

dot-bracket secondary structure
.((((((((.((((.((((((.((((((((((((((((((..((((((((((((((((....)))))........))))))))))).).)))))))))))
)))))).)))))).)))).))))))))


SIMILARITIES
miRBase ssp-MIR444c: 7e-55

PMRD pvi-miR444: 3e-51

microPC miR444: 7e-55		UniProt no hits

RFAM MIR444: 4e-60		most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045131)

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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