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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002457
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGTACTCCCTCCGTCTCAATA

miRNA*
 TTTCGGGACGGATGGAGTAGCTG

mismatches: 3
bulges: 2
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pre-miRNA
 CATAGTTAATGTGATGGTGATAAGTACTCCCTCCGTCTCAATAAATCAACTTCTAGTTCTCTTAAGTCAACTTTCTTAAGTTTGACCTAATTTGTAGAAA
ATATCACAAATATTTATGACACCAAACGAGTATCAATCATGAAATATATTTTCATAGCATAGCTATTTGGTATTATAGATGTTGGTACTCTTCTCCATAA
AGTTAGTCGAACTTAATATATTTCGACTTGGACAACTCTGGAGGTTGATTTATTTCGGGACGGATGGAGTAGCTGCCAGGTTCCAGTGTAACAT

dot-bracket secondary structure
....((((.((.(((((((.....((((((.(((((((((((((((((((((((((((.(((.(((((.......(((((((((((.(((((((.((((.
.(((((...((((((((((.((((((..(((.......((((((.....))))))......))).)))))).)))))))))))))))...)))).))...
))))))))))))))))........)))))))).))))..)))))))))))))))..)))))))).))))))..)))))...))))...))))..


SIMILARITIES
miRBase sbi-MIR1435b: 0.00006

PMRD sbi-miR1435b: 0.00006

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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