miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002457
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTACTCCCTCCGTCTCAATA

miRNA*
TTTCGGGACGGATGGAGTAGCTG

mismatches: 3
bulges: 2

View larger
pre-miRNA
CATAGTTAATGTGATGGTGATAAGTACTCCCTCCGTCTCAATAAATCAACTTCTAGTTCTCTTAAGTCAACTTTCTTAAGTTTGACCTAATTTGTAGAAA
ATATCACAAATATTTATGACACCAAACGAGTATCAATCATGAAATATATTTTCATAGCATAGCTATTTGGTATTATAGATGTTGGTACTCTTCTCCATAA
AGTTAGTCGAACTTAATATATTTCGACTTGGACAACTCTGGAGGTTGATTTATTTCGGGACGGATGGAGTAGCTGCCAGGTTCCAGTGTAACAT


dot-bracket secondary structure
....((((.((.(((((((.....((((((.(((((((((((((((((((((((((((.(((.(((((.......(((((((((((.(((((((.((((.
.(((((...((((((((((.((((((..(((.......((((((.....))))))......))).)))))).)))))))))))))))...)))).))...
))))))))))))))))........)))))))).))))..)))))))))))))))..)))))))).))))))..)))))...))))...))))..



SIMILARITIES
miRBase sbi-MIR1435b: 0.00006

PMRD sbi-miR1435b: 0.00006

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;