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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002459
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTTGCCTCAAGCTTGCTGCC

miRNA*
 CACCAAGCATGAGGCAGGAAC

mismatches: 3
bulges: 0
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pre-miRNA
 TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG

dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.(((((((((((((((((((.(((........))).....)))))))))))))))))))
.)))))))).)))))))).))))).))))..))..)))...


SIMILARITIES
miRBase ssp-MIR444b: 2e-55

PMRD tae-miR444: 3e-23

microPC miR444: 5e-47		UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0001

RFAM MIR444: 9e-49		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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