miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002459
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTTGCCTCAAGCTTGCTGCC

miRNA*
CACCAAGCATGAGGCAGGAAC

mismatches: 3
bulges: 0

View larger
pre-miRNA
TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG


dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.(((((((((((((((((((.(((........))).....)))))))))))))))))))
.)))))))).)))))))).))))).))))..))..)))...



SIMILARITIES
miRBase ssp-MIR444b: 2e-55

PMRD tae-miR444: 3e-23

microPC miR444: 5e-47
UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0001

RFAM MIR444: 9e-49
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;