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Species belonging to selected taxon:
Branchiostoma floridae
ABOUT THIS RECORD
ID:
MNEST024678
species:
Branchiostoma floridae
miRNA family:
mir-133
source:
miRBase, original name:
bfl-mir-133
(
MI0010028
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGTCCCCTTCAACCAGCTGTA
miRNA*
AAGCTGGTACATTGGAACCAAA
mismatches:
7
bulges:
0
View larger
pre-miRNA
AGTATCAGGGATGCTGTGCTA
AAGCTGGTACATTGGAACCAAA
TCAACTCCTCAATGGATT
TGGTCCCCTTCAACCAGCTGTA
GCATTGCACTTTTCAAG
C
dot-bracket secondary structure
.......(..((((.((((((
.(((((((.....((.((((((
((............))))
)))).)).....))))))).))
)))).)))..)..)...
.
SIMILARITIES
miRBase
xtr-mir-133a
:
2e-26
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-133: 2e-21
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"