miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024678
species: Branchiostoma floridae
miRNA family: mir-133
source: miRBase, original name: bfl-mir-133 (MI0010028)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGTCCCCTTCAACCAGCTGTA

miRNA*
AAGCTGGTACATTGGAACCAAA

mismatches: 7
bulges: 0

View larger
pre-miRNA
AGTATCAGGGATGCTGTGCTAAAGCTGGTACATTGGAACCAAATCAACTCCTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCATTGCACTTTTCAAG
C


dot-bracket secondary structure
.......(..((((.((((((.(((((((.....((.((((((((............)))))))).)).....))))))).)))))).)))..)..)...
.



SIMILARITIES
miRBase xtr-mir-133a: 2e-26

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 2e-21

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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