ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-135
source: miRBase, original name: bfl-mir-135a-1 (MI0010501)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGCTTTCATCCTATGTGAA miRNA* CACATTGGTGGAAGTCAAAGA mismatches: 2 bulges: 1 |
pre-miRNA
GTGTTCTATGGCTTTCATCCTATGTGAATGTTATCGCACATGTTCACATTGGTGGAAGTCAAAGAAGACGTGTGTGGAAACT
dot-bracket secondary structure
((.((((.(((((((((((..((((((((((........)))))))))).))))))))))).)))).))......(....).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
GTGTTCTATGGCTTTCATCCTATGTGAATGTTATCGCACATGTTCACATTGGTGGAAGTCAAAGAAGACGTGTGTGGAAACT
dot-bracket secondary structure
((.((((.(((((((((((..((((((((((........)))))))))).))))))))))).)))).))......(....).
SIMILARITIES| miRBase bfl-mir-135a-2: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: bfl-mir-135a-2 from miRBase (MNEST024680) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
