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Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024679
species: Branchiostoma floridae
miRNA family: mir-135
source: miRBase, original name: bfl-mir-135a-1 (MI0010501)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGGCTTTCATCCTATGTGAA

miRNA*
CACATTGGTGGAAGTCAAAGA

mismatches: 2
bulges: 1

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pre-miRNA
GTGTTCTATGGCTTTCATCCTATGTGAATGTTATCGCACATGTTCACATTGGTGGAAGTCAAAGAAGACGTGTGTGGAAACT

dot-bracket secondary structure
((.((((.(((((((((((..((((((((((........)))))))))).))))))))))).)))).))......(....).


SIMILARITIES
miRBase bfl-mir-135a-2: 2e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: bfl-mir-135a-2 from miRBase (MNEST024680)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




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