ABOUT THIS RECORDspecies: Agrostis stolonifera
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Agrostis stolonifera Agrostis Agrostidinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTTCGTCCTAAAAT miRNA* TTTAGGACGGAGGGAGT mismatches: 2 bulges: 0 |
pre-miRNA
TGAACAATATATATACTCCCTTCGTCCTAAAATATTTGTCAGAGATTTGTCTAAAGAAGTATGTATCTAAACATGTTTTAACTCTAGATACATCTATTTTT
TGACAAATCTCTGACAAGTATTTTAGGACGGAGGGAGT
dot-bracket secondary structure
).............(((((((((((((((((((((((((((((((((((((.((((.((.(((((((((.....((....))..))))))))))).)))).
.)))))))))))))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAACAATATATATACTCCCTTCGTCCTAAAATATTTGTCAGAGATTTGTCTAAAGAAGTATGTATCTAAACATGTTTTAACTCTAGATACATCTATTTTT
TGACAAATCTCTGACAAGTATTTTAGGACGGAGGGAGT
dot-bracket secondary structure
).............(((((((((((((((((((((((((((((((((((((.((((.((.(((((((((.....((....))..))))))))))).)))).
.)))))))))))))))))))))))))))))))))))))
SIMILARITIES| miRBase tae-MIR1128: 7.0E-6 PMRD hpi-miR1122: 7.0E-9 microPC miR1135: 7.0E-6 | UniProt no hits RFAM 2MIR1122: 1.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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