ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-34
source: miRBase, original name: csa-mir-34 (MI0007188)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAGTGTAGTTAGCTAGTTG miRNA* mismatches: 4 bulges: 97 |
pre-miRNA
ATTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTATCCGGGTGGGTTTGTACCCCACATCGGTTTTCATATAAACAACTACTTTTTGCAC
TA
dot-bracket secondary structure
.((((........))))..(((((((..((.(((((((((......(((((((((.......))))).)))).........)))))))))))..))))))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
ATTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTATCCGGGTGGGTTTGTACCCCACATCGGTTTTCATATAAACAACTACTTTTTGCAC
TA
dot-bracket secondary structure
.((((........))))..(((((((..((.(((((((((......(((((((((.......))))).)))).........)))))))))))..))))))
).
SIMILARITIES| miRBase cin-mir-34: 6e-18 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
