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Species belonging to selected taxon:

Ciona intestinalis, Molgula tectiformis, Ciona savignyi, Halocynthia roretzi



ABOUT THIS RECORD

ID: MNEST025320
species: Ciona savignyi
miRNA family: mir-34
source: miRBase, original name: csa-mir-34 (MI0007188)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGCAGTGTAGTTAGCTAGTTG

miRNA*


mismatches: 4
bulges: 97

View larger
pre-miRNA
ATTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTATCCGGGTGGGTTTGTACCCCACATCGGTTTTCATATAAACAACTACTTTTTGCAC
TA


dot-bracket secondary structure
.((((........))))..(((((((..((.(((((((((......(((((((((.......))))).)))).........)))))))))))..))))))
).



SIMILARITIES
miRBase cin-mir-34: 6e-18

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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