ABOUT THIS RECORDspecies: Ciona savignyi
source: miRBase, original name: csa-mir-217 (MI0007203)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTGCATTAGGAACTGATTGG miRNA* ACTCAGTTTCAGGTGCATTAAA mismatches: 4 bulges: 0 |
pre-miRNA
GAAAGTGGGGCGAGATACTGCATTAGGAACTGATTGGTTGTTAATTTCACTCAGTTTCAGGTGCATTAAATTGCTACACTATATGTCATCCACCAGTATG
AG
dot-bracket secondary structure
...((((..((((..((.(((((..((((((((.(((.........))).))))))))..))))).))..))))..)))).....((((.(....).)))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GAAAGTGGGGCGAGATACTGCATTAGGAACTGATTGGTTGTTAATTTCACTCAGTTTCAGGTGCATTAAATTGCTACACTATATGTCATCCACCAGTATG
AG
dot-bracket secondary structure
...((((..((((..((.(((((..((((((((.(((.........))).))))))))..))))).))..))))..)))).....((((.(....).)))
).
SIMILARITIES| miRBase cin-mir-217: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-217: 5e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
