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Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST025335
species: Ciona savignyi
source: miRBase, original name: csa-mir-217 (MI0007203)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTGCATTAGGAACTGATTGG

miRNA*
ACTCAGTTTCAGGTGCATTAAA

mismatches: 4
bulges: 0

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pre-miRNA
GAAAGTGGGGCGAGATACTGCATTAGGAACTGATTGGTTGTTAATTTCACTCAGTTTCAGGTGCATTAAATTGCTACACTATATGTCATCCACCAGTATG
AG


dot-bracket secondary structure
...((((..((((..((.(((((..((((((((.(((.........))).))))))))..))))).))..))))..)))).....((((.(....).)))
).



SIMILARITIES
miRBase cin-mir-217: 0.000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-217: 5e-40

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record

references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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