ABOUT THIS RECORDspecies: Salvia miltiorrhiza
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Salvia miltiorrhiza Salvia Mentheae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* ACTCTCTATACTTCTGTCATCA mismatches: 2 bulges: 1 |
pre-miRNA
GGGGGTAGGTAGGGGGTTTTGCTGTTGTTGACAGAAGATAGAGAGCACCAACGATGAAGTTGCAAACTTTGCATCTCACTCCTTTGTACTCTCTATACTT
CTGTCATCACACTCACAAATCCTCTATCAACTA
dot-bracket secondary structure
...(((.((((((((((((....((((.(((((((((((((((((.((.((.(((((...(((((...)))))..))).)).)).)).)))))))).)))
)))))).)).))....)))))))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGGTAGGTAGGGGGTTTTGCTGTTGTTGACAGAAGATAGAGAGCACCAACGATGAAGTTGCAAACTTTGCATCTCACTCCTTTGTACTCTCTATACTT
CTGTCATCACACTCACAAATCCTCTATCAACTA
dot-bracket secondary structure
...(((.((((((((((((....((((.(((((((((((((((((.((.((.(((((...(((((...)))))..))).)).)).)).)))))))).)))
)))))).)).))....)))))))))))).))).
SIMILARITIES| miRBase vvi-MIR156g: 0.000000000000002 PMRD vvi-miR156g: 0.000000000000002 microPC miR157: 2e-39 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR157 from microPC (MNEST045887) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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