miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ocimum basilicum, Salvia miltiorrhiza



ABOUT THIS RECORD

ID: MNEST002589
species: Salvia miltiorrhiza
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Salvia miltiorrhiza Salvia Mentheae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
ACTCTCTATACTTCTGTCATCA

mismatches: 2
bulges: 1

View larger
pre-miRNA
GGGGGTAGGTAGGGGGTTTTGCTGTTGTTGACAGAAGATAGAGAGCACCAACGATGAAGTTGCAAACTTTGCATCTCACTCCTTTGTACTCTCTATACTT
CTGTCATCA
CACTCACAAATCCTCTATCAACTA


dot-bracket secondary structure
...(((.((((((((((((....((((.(((((((((((((((((.((.((.(((((...(((((...)))))..))).)).)).)).)))))))).)))
)))))).))
.))....)))))))))))).))).



SIMILARITIES
miRBase vvi-MIR156g: 0.000000000000002

PMRD vvi-miR156g: 0.000000000000002

microPC miR157: 2e-39
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR157 from microPC (MNEST045887)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;