ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATC mismatches: 0 bulges: 1 |
pre-miRNA
GGAAGAAAGAGTGATTATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGT
GCTCTCTATGCTTCTGTCATCACCTTCACCTCTTTCGTA
dot-bracket secondary structure
....((((((((((....((.((((((((((((((((((((.((((((((.(((((.......((((...)))).......))))).)))..))))).))
))))))))).))))))))).))...))).)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
GGAAGAAAGAGTGATTATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGT
GCTCTCTATGCTTCTGTCATCACCTTCACCTCTTTCGTA
dot-bracket secondary structure
....((((((((((....((.((((((((((((((((((((.((((((((.(((((.......((((...)))).......))))).)))..))))).))
))))))))).))))))))).))...))).)))))))...
SIMILARITIES| miRBase sly-MIR156a: 8e-52 PMRD sly-miR156a: 8e-52 microPC miR157: 3e-51 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
