ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR2004
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGTTTTTATCTTATTTTGA miRNA* AAGATATAAGATGCAGATTTTGAA mismatches: 5 bulges: 1 |
pre-miRNA
TAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTA
TCTTATTTTGAGTAAGCGAT
dot-bracket secondary structure
...(((((((...((.((((((((.((((...(((..(((((((((.((.....(((((((...)))))))...)).)))))))))..)))..)))).))
)))))).)).))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGTGCTGCTGAAGATATAAGATGCAGATTTTGAAGTGAAGGGCAATTGCTATATAGAGCTAGAAGCTTTGATCCATTTGTTCTTCTATTCTTGTTTTTA
TCTTATTTTGAGTAAGCGAT
dot-bracket secondary structure
...(((((((...((.((((((((.((((...(((..(((((((((.((.....(((((((...)))))))...)).)))))))))..)))..)))).))
)))))).)).))).))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
