ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCAT miRNA* GCAACATCATCAAGATTCAC mismatches: 1 bulges: 0 |
pre-miRNA
ATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAA
TATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTAT
dot-bracket secondary structure
......((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........))))))))))))
)..)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
ATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAA
TATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTAT
dot-bracket secondary structure
......((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........))))))))))))
)..)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).)))))....
SIMILARITIES| miRBase tcc-MIR172c: 0.00000004 PMRD ath-miRf10634-akr: 0.0000006 microPC miR172: 0.00003 | UniProt no hits RFAM mir-172: 0.000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
