miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST026356
species: Gallus gallus
miRNA family: miR-3523
source: miRBase, original name: gga-mir-3523 (MI0015375)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCGCGCAGTGCCTCGTCCTCGA

miRNA*
 GAGTGCGAGGCGCTGCGGGGG

mismatches: 3
bulges: 1
View larger
pre-miRNA
 GCCGAGCCGAACGGAGCCGAGCGGCGGGGCCATGGTGAACCTGCGGGTGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCG
CAGTGCCTCGTCCTCGACTGCCGCTCCTTCTTCTCCTTCAACGCCGCGCACATCCGCGGCTCCTGC

dot-bracket secondary structure
((.((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((..((((((((((((((.((.(((.....))))).)).))
))))))))))..))).).)))))).))).)))).))..)..)))))).....))))))))))..))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q64623|DUS1_RAT: 0.00000003

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"



Liczniki na strone;