miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gallus gallus



ABOUT THIS RECORD

ID: MNEST026356
species: Gallus gallus
miRNA family: miR-3523
source: miRBase, original name: gga-mir-3523 (MI0015375)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCGCGCAGTGCCTCGTCCTCGA

miRNA*
GAGTGCGAGGCGCTGCGGGGG

mismatches: 3
bulges: 1

View larger
pre-miRNA
GCCGAGCCGAACGGAGCCGAGCGGCGGGGCCATGGTGAACCTGCGGGTGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCG
CAGTGCCTCGTCCTCGA
CTGCCGCTCCTTCTTCTCCTTCAACGCCGCGCACATCCGCGGCTCCTGC


dot-bracket secondary structure
((.((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((..((((((((((((((.((.(((.....))))).)).))
))))))))))..))).)
.)))))).))).)))).))..)..)))))).....))))))))))..))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q64623|DUS1_RAT: 0.00000003

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"




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