miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Danio rerio, Rattus norvegicus, Xenopus laevis, Oryzias latipes, Gallus gallus, Salmo salar, Canis lupus familiaris, Ictalurus punctatus, Ovis aries, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Ictalurus furcatus, Homo sapiens, Oreochromis niloticus, Taeniopygia guttata, Peromyscus maniculatus bairdii, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Pongo abelii, Ursus americanus, Equus caballus, Dissostichus mawsoni, Osmerus mordax, Oryctolagus cuniculus, Macaca nemestrina, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Rana catesbeiana, Takifugu rubripes, Cynops pyrrhogaster, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Rutilus rutilus, Meleagris gallopavo, Lonchura striata domestica, Poecilia reticulata, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Oncorhynchus tshawytscha, Capra hircus, Paralichthys olivaceus, Psetta maxima, Pan troglodytes verus, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST026356
species: Gallus gallus
miRNA family: miR-3523
source: miRBase, original name: gga-mir-3523 (MI0015375)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CCGCGCAGTGCCTCGTCCTCGA

miRNA*
GAGTGCGAGGCGCTGCGGGGG

mismatches: 3
bulges: 1

View larger

pre-miRNA
GCCGAGCCGAACGGAGCCGAGCGGCGGGGCCATGGTGAACCTGCGGGTGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCG
CAGTGCCTCGTCCTCGACTGCCGCTCCTTCTTCTCCTTCAACGCCGCGCACATCCGCGGCTCCTGC

dot-bracket secondary structure
((.((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((..((((((((((((((.((.(((.....))))).)).))
))))))))))..))).).)))))).))).)))).))..)..)))))).....))))))))))..))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt sp|Q64623|DUS1_RAT: 0.00000003

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"