ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAC mismatches: 2 bulges: 0 |
pre-miRNA
AACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCTA
CTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAA
dot-bracket secondary structure
.....(((((((((...((((.(((((.((((((((((.((((((((..(((((((.((((((........)))).))...((((((..((.((....))
.))..))))))...(((((((....))))).))..)))))))....)))))))).)))))))))).))))).))))...)))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCTA
CTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAA
dot-bracket secondary structure
.....(((((((((...((((.(((((.((((((((((.((((((((..(((((((.((((((........)))).))...((((((..((.((....))
.))..))))))...(((((((....))))).))..)))))))....)))))))).)))))))))).))))).))))...)))))))))....
SIMILARITIES| miRBase tcc-MIR168: 0.0000002 PMRD sly-miR168: 4e-76 microPC miR168: 2e-78 | UniProt no hits RFAM MIR168: 0.0000002 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST045240) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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