miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002648
species: Solanum lycopersicum
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCTA
CTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAA

dot-bracket secondary structure
.....(((((((((...((((.(((((.((((((((((.((((((((..(((((((.((((((........)))).))...((((((..((.((....))
.))..))))))...(((((((....))))).))..)))))))....)))))))).)))))))))).))))).))))...)))))))))....


SIMILARITIES
miRBase tcc-MIR168: 0.0000002

PMRD sly-miR168: 4e-76

microPC miR168: 2e-78		UniProt no hits

RFAM MIR168: 0.0000002		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST045240)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;