miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002654
species: Solanum melongena
miRNA family: MIRf592
source: miRNEST

Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAAGTTGTCCCTGGCTATA

miRNA*
 CAGCCAGGGATGACTTGCCGA

mismatches: 1
bulges: 0
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pre-miRNA
 GTATAATTTCTGTGTGGAAGGAAATTTACATGAAGAAATGGAGAATGGTTTGCAGCCAGGGATGACTTGCCGAGGTTCTCTTACAAATTATTCTATTAAG
GATTTTGCGTCGGCAAGTTGTCCCTGGCTATATTTCGCTCTCTTCTTCTCATGCAAACTTCTTCACACCTATTTTTATTTT

dot-bracket secondary structure
...........((((((..((((.(((.(((((.(((..(((((.(((..((.((((((((((((((((((((.((..(((((.............))))
).....)).)))))))))))))))))))).))..))).)))))..)))))))).))).)))))))))).............


SIMILARITIES
miRBase ath-MIR169b: 0.0000000006

PMRD ath-miR169b: 0.0000000006

microPC miR169: 0.00004		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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