ABOUT THIS RECORDspecies: Sorghum propinquum
miRNA family: miR171k
source: miRNEST
Taxonomy by NCBI:
Sorghum propinquum Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTATTGTTTCAGCTCATGT miRNA* ATGTGCTGAAGGAGAATTTCTTC mismatches: 3 bulges: 2 |
pre-miRNA
ACCTACACAGTGGGAGCATGTGCTGAAGGAGAATTTCTTCCATCCAGGCAAATAGGCGAAATGTGAACCATAAACTGGAAAGGTATTGTTTCAGCTCATG
TTGCCTCAGAATGCTGATGCTTCTTGTAAATATGATATTATACATCCTCT
dot-bracket secondary structure
.(((((...))))).(((((.(((((((...(((.((((...(((((.........((.....)).........))))))))).))).))))))).))))
).((.((((....)))).))....((((((((...)))).))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCTACACAGTGGGAGCATGTGCTGAAGGAGAATTTCTTCCATCCAGGCAAATAGGCGAAATGTGAACCATAAACTGGAAAGGTATTGTTTCAGCTCATG
TTGCCTCAGAATGCTGATGCTTCTTGTAAATATGATATTATACATCCTCT
dot-bracket secondary structure
.(((((...))))).(((((.(((((((...(((.((((...(((((.........((.....)).........))))))))).))).))))))).))))
).((.((((....)))).))....((((((((...)))).))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
