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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002680
species: Sorghum propinquum
miRNA family: miR171k
source: miRNEST

Taxonomy by NCBI:
Sorghum propinquum Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGTATTGTTTCAGCTCATGT

miRNA*
ATGTGCTGAAGGAGAATTTCTTC

mismatches: 3
bulges: 2

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pre-miRNA
ACCTACACAGTGGGAGCATGTGCTGAAGGAGAATTTCTTCCATCCAGGCAAATAGGCGAAATGTGAACCATAAACTGGAAAGGTATTGTTTCAGCTCATG
T
TGCCTCAGAATGCTGATGCTTCTTGTAAATATGATATTATACATCCTCT


dot-bracket secondary structure
.(((((...))))).(((((.(((((((...(((.((((...(((((.........((.....)).........))))))))).))).))))))).))))
)
.((.((((....)))).))....((((((((...)))).))))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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