ABOUT THIS RECORDspecies: Taraxacum kok-saghyz
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCCGGCTCGATG mismatches: 4 bulges: 0 |
pre-miRNA
CTGGGAAAGCTTTGTTTGTGGGGAATGTTGTCCGGCTCGATGCCTACAAACCTTCATCATAGATACAATCATTCGTGGTATCTATATATACAATAGGTAT
GATGATGCTCTAATGTCGTCGGACCAGGCTTCATTCCCCTCAAATTTCGCTTCCATT
dot-bracket secondary structure
...((((.((...(((((.((((((((..(((.((.((((((...........(((((((((((((...........))))))))..((((.....))))
)))))...........)))))).)).)))..)))))))).)))))...))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTGGGAAAGCTTTGTTTGTGGGGAATGTTGTCCGGCTCGATGCCTACAAACCTTCATCATAGATACAATCATTCGTGGTATCTATATATACAATAGGTAT
GATGATGCTCTAATGTCGTCGGACCAGGCTTCATTCCCCTCAAATTTCGCTTCCATT
dot-bracket secondary structure
...((((.((...(((((.((((((((..(((.((.((((((...........(((((((((((((...........))))))))..((((.....))))
)))))...........)))))).)).)))..)))))))).)))))...))))))...
SIMILARITIES| miRBase aqc-MIR166e: 0.0000000005 PMRD aqc-miR166e: 0.0000000005 microPC miR166: 0.0000001 | UniProt no hits RFAM mir-166: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
