ABOUT THIS RECORDspecies: Taraxacum kok-saghyz
miRNA family: miR171b-5p
source: miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGGCGTGGTATTGGTACGGT miRNA* CGAACCAATATCACTCTTGT mismatches: 2 bulges: 1 |
pre-miRNA
AAGAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGCGTGGTATTGGTACGGTTCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTG
ACATGAGCCGAACCAATATCACTCTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCGA
dot-bracket secondary structure
)..............((((((.(((..((((((((((.(((.((.(((((((((((.(((((((((((..(((((((............)))))))..)))
)..))))))).))))))))))))).))).))))))))))......))).)))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGCGTGGTATTGGTACGGTTCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTG
ACATGAGCCGAACCAATATCACTCTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCGA
dot-bracket secondary structure
)..............((((((.(((..((((((((((.(((.((.(((((((((((.(((((((((((..(((((((............)))))))..)))
)..))))))).))))))))))))).))).))))))))))......))).)))))).........
SIMILARITIES| miRBase vvi-MIR479: 3.0E-8 PMRD vvi-miR479: 3.0E-8 microPC miR171: 0.0001 | UniProt no hits RFAM 2MIR171_2: 1.0E-8 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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