miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST002695
species: Taraxacum kok-saghyz
miRNA family: miR171b-5p
source: miRNEST

Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACGGCGTGGTATTGGTACGGT

miRNA*
CGAACCAATATCACTCTTGT

mismatches: 2
bulges: 1

View larger
pre-miRNA
AGAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGCGTGGTATTGGTACGGTTCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTG
ACATGAGCCGAACCAATATCACTCTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCGA


dot-bracket secondary structure
..............((((((.(((..((((((((((.(((.((.(((((((((((.(((((((((((..(((((((............)))))))..)))
)..))))))).))))))))))))).))).))))))))))......))).)))))).........



SIMILARITIES
miRBase vvi-MIR479: 0.00000003

PMRD vvi-miR479: 0.00000003

microPC miR171: 0.0001
UniProt no hits

RFAM MIR171_2: 0.00000001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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