miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002713
species: Thellungiella halophila
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGGAGGGATTCCTTCTTTG

miRNA*
 AAGCGTGGATTCTTTCTGGATG

mismatches: 3
bulges: 1
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pre-miRNA
 CTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCG
CTGCTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA

dot-bracket secondary structure
......(((......((((((((((...(((.(((((((((((...(((((..(((.......))).((((((..((((.....)))))))))).....)
))))..))))))))))).)))..))))))))))......))).....


SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.00003

microPC no hits		UniProt sp|P0CH32|UBQ4_ARATH: 2e-20

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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