ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCAACACCTCCCATAC miRNA* ATGGGAGTATTGGGCAGTAT mismatches: 3 bulges: 1 |
pre-miRNA
GGAGTCGTAGGTATGGGAGTATTGGGCAGTATTATGACCTTTGCTAAATCAAAGGGGCAATTCTTCCCAACACCTCCCATACCCTTGGTTT
dot-bracket secondary structure
....(((..(((((((((((.(((((.((.((..((.((((((......))))))..)))).)).))))).).))))))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGAGTCGTAGGTATGGGAGTATTGGGCAGTATTATGACCTTTGCTAAATCAAAGGGGCAATTCTTCCCAACACCTCCCATACCCTTGGTTT
dot-bracket secondary structure
....(((..(((((((((((.(((((.((.((..((.((((((......))))))..)))).)).))))).).))))))))))..)))...
SIMILARITIES| miRBase ghr-MIR2948: 0.000000000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
