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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002717
species: Theobroma cacao
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCAACACCTCCCATAC

miRNA*
ATGGGAGTATTGGGCAGTAT

mismatches: 3
bulges: 1

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pre-miRNA
GGAGTCGTAGGTATGGGAGTATTGGGCAGTATTATGACCTTTGCTAAATCAAAGGGGCAATTCTTCCCAACACCTCCCATACCCTTGGTTT

dot-bracket secondary structure
....(((..(((((((((((.(((((.((.((..((.((((((......))))))..)))).)).))))).).))))))))))..)))...


SIMILARITIES
miRBase ghr-MIR2948: 0.000000000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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